Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: f4c51a054b1ec51d07d89c6a8218e610653675f3 |
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tt_hmmsearch_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5 |
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apolloServer-createOrganism-workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: apolloServer-createOrganism-workflow.cwl Branch/Commit ID: 0ecf492419ddaa015f14a163381948c53b3deea6 |
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kmer_gc_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_gc_extract_wnode.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5 |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: 56dafa4dab5892c5afa35713563dddc78ec5a00d |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 0d2f354af9192a56af258a7d2426c7c160f4ec1a |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 93fbc4e51770d953fc44104a7b09436f75719470 |
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final-workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: final-workflow.cwl Branch/Commit ID: add45db6f08de518e224bdc3c04094fd69cad2d2 |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 93fbc4e51770d953fc44104a7b09436f75719470 |
