Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	PGAP Pipeline, simple user input PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)	https://github.com/ncbi/pgap.git Path: wf_pgap_simple.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c
	fastq_clean_se.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/fastq_clean_se.cwl Branch/Commit ID: 20a901f44c9fb0e6f4ee3c40ec33fa4b1c8ef005
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: d2c2f2eb846ae2e9cdcab46e3bb88e42126cb3f5
	directory.cwl Inspect provided directory and return filenames. Generate a new directory and return it (including content).	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/directory.cwl Branch/Commit ID: fd6e054510e2bb65eed4069a3a88013d7ecbb99c
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: d2c2f2eb846ae2e9cdcab46e3bb88e42126cb3f5
	Genomic regions intersection and visualization Genomic regions intersection and visualization ============================================== 1. Merges intervals within each of the filtered peaks files from ChIP/ATAC experiments 2. Overlaps merged intervals and assigns the nearest genes to them	https://github.com/datirium/workflows.git Path: workflows/intervene.cwl Branch/Commit ID: 2caa50434966ebdf4b33e5ca689c2e4df32f9058
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: ce433f771ebf5677c9f40858e2ae91b1a7e75d30
	taxcheck.cwl Perform taxonomic identification tasks on an input genome	https://github.com/ncbi/pgap.git Path: taxcheck.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee
	count-lines10-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl Branch/Commit ID: 5c7799a145595323d0a8628be1fe0e24985e793a
	umi duplex alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/umi_duplex_alignment.cwl Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd