Explore Workflows

Decompress mate pair fastq files

https://github.com/MG-RAST/amplicon.git

Path: CWL/Workflows/decompress_mate_pair.workflow.cwl

Branch/Commit ID: 67fc58a072d6a72658a54244f6dded172f57314c

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/kfdrc_RNAseq_workflow.cwl

Branch/Commit ID: e571438c9c0848bc053d1da8804762749e475bde

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/pilot-run/worklflows/kfdrc_alignment_pipeline.cwl

Branch/Commit ID: 391424d2801eeed6cfe8a35530b724d11f85a9ae

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: c9967fa6b52fb799710fe47512088a310a44cd04

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/downsample_workflow.cwl

Branch/Commit ID: eb565eac07209017b12ed79057b40cbf44fb6a0d

https://github.com/IFB-ElixirFr/ReproHackathon.git

Path: reprohackathon2/cwl/fasttree-compare.cwl

Branch/Commit ID: 6f72eeb118e1c9176318f3d5491fb5379fe5baff

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 00e98923d9ce49790080f88ae46f3d73a19eb65b

https://github.com/hubmapconsortium/mibi-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: 8f5081d4ffd859ed664e676d79e1452ca1a5996b

https://github.com/hubmapconsortium/codex-pipeline.git

Path: steps/ometiff_second_stitching.cwl

Branch/Commit ID: a55bd4705b4d8a22174ae3b52aad34d6f9028feb

https://github.com/hubmapconsortium/codex-pipeline.git

Path: steps/illumination_first_stitching.cwl

Branch/Commit ID: b23af942f4a1169fc3d331272fd56ae878af6c1d