Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Creates FASTA file from BED coordinates

This workflow creates FASTA file from BED coordinates

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/fasta-from-bed.cwl

Branch/Commit ID: f37e1346f1d48fe9f2b9282e37997a2e3ffed7e2
workflow graph BLASTP, parse, dump FASTA

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/simple_three_step.cwl

Branch/Commit ID: 0d2a5b145fce0e8424b7cebc4d2881cc30e40ca4
workflow graph genomics-workspace-cds.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace-cds.cwl

Branch/Commit ID: b1e1b906fcfb2c0fad8811fb8ab03009282c1d19
workflow graph facets

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/facets.cwl

Branch/Commit ID: 72353a747f45ffe35863c3b6c70b28a676a97643
workflow graph samples_fillout_workflow.cwl

https://github.com/mskcc/pluto-cwl.git

Path: cwl/samples_fillout_workflow.cwl

Branch/Commit ID: e19ef998e906eb915cf4351a3599abd9bff57205
workflow graph realignment.cwl

https://github.com/mskcc/roslin-cwl.git

Path: modules/pair/realignment.cwl

Branch/Commit ID: 4034144f39a9428307e82efe1f812c1d37c79de5
workflow graph portal-workflow.cwl

https://github.com/mskcc/pluto-cwl.git

Path: cwl/portal-workflow.cwl

Branch/Commit ID: 342e6f1f4f7a3839e579fbe96ccc8d6f7a61ac77
workflow graph fillout_workflow.cwl

Workflow to run GetBaseCountsMultiSample fillout on a number of bam files with a single maf file

https://github.com/mskcc/pluto-cwl.git

Path: cwl/fillout_workflow.cwl

Branch/Commit ID: e19ef998e906eb915cf4351a3599abd9bff57205
workflow graph tmb_workflow.cwl

Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file

https://github.com/mskcc/pluto-cwl.git

Path: cwl/tmb_workflow.cwl

Branch/Commit ID: 342e6f1f4f7a3839e579fbe96ccc8d6f7a61ac77
workflow graph example_workflow.cwl

Example CWL workflow that uses some advanced features

https://github.com/mskcc/pluto-cwl.git

Path: cwl/example_workflow.cwl

Branch/Commit ID: e19ef998e906eb915cf4351a3599abd9bff57205