Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wf_get_peaks_scatter_se_nostats.cwl

The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples.

https://github.com/yeolab/eclip.git

Path: cwl/wf_get_peaks_scatter_se_nostats.cwl

Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256
workflow graph wf_get_peaks_nostats_se.cwl

https://github.com/yeolab/eclip.git

Path: cwl/wf_get_peaks_nostats_se.cwl

Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256
workflow graph wf_clipseqcore_nostats_se_1barcode.cwl

https://github.com/yeolab/eclip.git

Path: cwl/wf_clipseqcore_nostats_se_1barcode.cwl

Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256
workflow graph alignment_bwa_mem_prod.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem_prod.cwl

Branch/Commit ID: 13c106834d6c9031de08496faeff521740a0c95f
workflow graph alignment_novoalign.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_novoalign.cwl

Branch/Commit ID: 8b8c058848e4efe8b12e4070efec046835a19508
workflow graph l1b_workflow.cwl

https://github.com/unity-sds/sounder-sips-application.git

Path: cwl/l1b_workflow.cwl

Branch/Commit ID: a1e2cf4b07504820129cd8ed7554134b4534f79d
workflow graph genotypegvcfs.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/genotypegvcfs.cwl

Branch/Commit ID: 342c8a39d5823bbcf298d2f807ec235910e5f412
workflow graph rnaseq-kallisto-pe.cwl

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/RNA-seq/rnaseq-kallisto-pe/rnaseq-kallisto-pe.cwl

Branch/Commit ID: c4dfeeb0872861e302834354446f14e298bce9b3
workflow graph revsortlcase.cwl

https://github.com/simleo/workflow-run-crate.git

Path: tools/cwlprov_to_crate/revsortlcase/revsortlcase.cwl

Branch/Commit ID: f491df4d29e6300eb97ff36c2b86fa00b5426b7c
workflow graph revsort.cwl

https://github.com/simleo/workflow-run-crate.git

Path: tools/cwlprov_to_crate/revsortlcase/revsort.cwl

Branch/Commit ID: f491df4d29e6300eb97ff36c2b86fa00b5426b7c