Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: preprocess_vcf.cwl Branch/Commit ID: 1.0.0 |
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hisat2_index.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/hisat2_index.cwl Branch/Commit ID: master |
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qiime2 rarefaction visualization
Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-07-alpha-rarefaction.cwl Branch/Commit ID: develop |
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04-quantification-se-unstranded.cwl
RNA-seq 04 quantification |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl Branch/Commit ID: master |
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bams2gvcf.woBQSR_male.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_male.cwl Branch/Commit ID: master |
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fastqPE2bam.multisamples.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/fastqPE2bam.multisamples.cwl Branch/Commit ID: master |
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workflow1_11.cwl#VDJ_GatherCalls.cwl
VDJ_GatherCalls collect the outputs from the multi-processed VDJ step into one file. |
https://github.com/GeorgeAlehandro/cwl_1_11.git
Path: workflow1_11.cwl Branch/Commit ID: main Packed ID: VDJ_GatherCalls.cwl |
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SSU-from-tablehits.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 3168316 |
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dynresreq-workflow.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/dynresreq-workflow.cwl Branch/Commit ID: master |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: annotator_sub_wf.cwl Branch/Commit ID: master |