Explore Workflows

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/step-valuefrom5-wf.cwl

Branch/Commit ID: 9a23706ec061c5d2c02ff60238d218aadf0b5db9

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: flow_create_readme/readme-genePrediction-workflow.cwl

Branch/Commit ID: 556884e8e205295e561b1d9140d836cdd6c1d8c9

https://github.com/ncbi/pgap.git

Path: bacterial_kmer/wf_bacterial_kmer.cwl

Branch/Commit ID: c009eeba7379efbbd37b8d5013a83f161f06939b

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: f8ea70d9461bd496f0a8f82ca450fca900b6972c

https://github.com/yamaken37/jga-analysis.git

Path: rna-seq/Workflows/rna-seq-pipeline-per-sample_PE.cwl

Branch/Commit ID: 73dbaf552d96d4922e41159509dcf271eade9642

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/qc.cwl

Branch/Commit ID: 2e31b8ddd4d509c7bbcb983ad41e401687623ddb

Reverse the lines in a document, then sort those lines.

https://github.com/Duke-GCB/calrissian.git

Path: input-data/revsort-single.cwl

Branch/Commit ID: 4fd8e7dbcff5492cb32e4fb15263a51fa4490cf1

https://github.com/common-workflow-language/user_guide.git

Path: src/_includes/cwl/workflows/1st-workflow.cwl

Branch/Commit ID: 7f19ad8da5dba35b496c67dab3875e7a75193dc9

This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/standard_pipeline.cwl

Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/sorter.cwl

Branch/Commit ID: 2e31b8ddd4d509c7bbcb983ad41e401687623ddb