Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	oxog_sub_wf.cwl This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!	https://github.com/baminou/OxoG-Dockstore-Tools.git Path: oxog_sub_wf.cwl Branch/Commit ID: 96324c1392b6b774498e415346956e77e5d8dd86
	oxog_sub_wf.cwl This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!	https://github.com/baminou/OxoG-Dockstore-Tools.git Path: oxog_sub_wf.cwl Branch/Commit ID: 0fa87c018a21d55cdea6e89be1feec1913144009
	Bacterial Annotation (two-pass) pass 1	https://github.com/ncbi-gpipe/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216
	metrics.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/dnaseq/metrics.cwl Branch/Commit ID: 53fd4d4c05891c7c8b5cd6a5a8179a08c2e585c9
	Dockstore.cwl INTEGRATE workflow: untar, tophat align, samtools index, Integrate fusion	https://github.com/Jeltje/integrate.git Path: Dockstore.cwl Branch/Commit ID: d30bfc8382d2e5d3842523ef5410d6c915940b4b
	preprocess_vcf.cwl This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.	https://github.com/baminou/OxoG-Dockstore-Tools.git Path: preprocess_vcf.cwl Branch/Commit ID: f736cf8f663fbba8f1b4158431f2b6a6d88491b4
	Bacterial Annotation (two-pass) pass 1	https://github.com/ncbi-gpipe/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: a539d600357a48a558daf43fc41a89aae79f9e86
	functional analysis prediction with InterProScan	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: workflows/functional_analysis.cwl Branch/Commit ID: fa86fce570ab91c624272c8ffda672069d2f276d
	LSU-from-tablehits.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: 823cdf7a6601a3799f6167f3566ae02590748f6b
	Varscan Workflow	https://github.com/genome/cancer-genomics-workflow.git Path: varscan/workflow.cwl Branch/Commit ID: 6791f7701b91dd64f9255d6e1ebde5995ebc581e