Explore Workflows

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow.cwl

Branch/Commit ID: 9998da2da694af2edad7c2135f6995e2282794a3

https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git

Path: PreProcessing/batch-preprocess-ont.cwl

Branch/Commit ID: 3114ddd28bbee5505a9819b1a84f4896fd0b0992

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/js-expr-req-wf.cwl

Branch/Commit ID: 9e7c68c0834645ba53a7e2b5f70d53df9d051c92

Packed ID: wf

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/echo-wf-default.cwl

Branch/Commit ID: 26870e38cec81af880cd3e4789ae6cee8fc27020

https://github.com/nal-i5k/organism_onboarding.git

Path: MoveData-workflow.cwl

Branch/Commit ID: f452184daca189341f65e09a0d5ab878dd312dfd

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl

Branch/Commit ID: 32a040f94e9798bf91858da51598f0d68c35797d

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/io-any-wf-1.cwl

Branch/Commit ID: 86c46cb397de029e4c91f02cca40fa2b54d22f37

This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/standard_pipeline.cwl

Branch/Commit ID: 9998da2da694af2edad7c2135f6995e2282794a3

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf1.cwl

Branch/Commit ID: 26870e38cec81af880cd3e4789ae6cee8fc27020

https://github.com/ncbi/pgap.git

Path: progs/protein_extract.cwl

Branch/Commit ID: 369afa7090a7480e6a0b144eff967a4a52b6fde2