Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph no-inputs-wf.cwl

Workflow without inputs.

 https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/no-inputs-wf.cwl

Branch/Commit ID: b1d4a69df86350059bd49aa127c02be0c349f7de
workflow graph vqsr.cwl

https://github.com/biosciencedbc/jga-analysis.git

Path: multi-samples/Workflows/vqsr.cwl

Branch/Commit ID: main
workflow graph vcf_concat.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/vcf_concat.cwl

Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf
workflow graph BD Rhapsody™ WTA Analysis Pipeline

The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

 https://github.com/GeorgeAlehandro/cwl_1_11.git

Path: workflow1_11.cwl

Branch/Commit ID: 46d4472af75afacfb13ed92d149a4decd015cf43

Packed ID: main
workflow graph two-step-workflow.cwl

https://github.com/BiodataAnalysisGroup/intro-to-cwl-docker.git

Path: _includes/cwl/two-step-workflow.cwl

Branch/Commit ID: 4b43712319e2009c3867446b5dd1e8e31e897458
workflow graph dfast-filelist.cwl

https://github.com/nigyta/bact_genome.git

Path: cwl/workflow/dfast-filelist.cwl

Branch/Commit ID: e316f37f502005165ebd7f22b5257900c7c712ac
workflow graph Restore contig names

Restore the contig names using the map file

 https://github.com/EBI-Metagenomics/emg-viral-pipeline.git

Path: cwl/src/Tools/FastaRename/fasta_restore_swf.cwl

Branch/Commit ID: aad5474411ea31449b3e8a26eeed8920dd07fa17
workflow graph rnaseq_metrics_workflow.cwl

https://github.com/NCI-GDC/gdc-rnaseq-cwl.git

Path: rnaseq-star-align/subworkflows/rnaseq_processing/rnaseq_metrics_workflow.cwl

Branch/Commit ID: 88fb720c62a3c2b00ca475d412fba088c4a08f92
workflow graph workflow.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_apollo2_data_processing/processing/workflow.cwl

Branch/Commit ID: 5910b4d88aca172252d9102ddb610a7dc9e1347f
workflow graph gatk4.2.4.1_mutect2_workflow.cwl

GATK4.2.4.1 Mutect2 workflow

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: subworkflows/gatk4.2.4.1_mutect2_workflow.cwl

Branch/Commit ID: 4a93f8fcd34a25427b4ade8afe1772a3287fcf1e