Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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exome alignment with qc
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https://github.com/MarkRobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: 0ae2468ab2ba0b9a196c2aa89b580555750bf0f6 Packed ID: main |
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fastqtosam_pe.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/fastqtosam/fastqtosam_pe.cwl Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0 |
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lobSTR-workflow.cwl
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https://github.com/common-workflow-language/workflows.git
Path: workflows/lobSTR/lobSTR-workflow.cwl Branch/Commit ID: 933bf2a1a1cce32d88f88f136275535da9df0954 |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/baminou/OxoG-Dockstore-Tools.git
Path: annotator_sub_wf.cwl Branch/Commit ID: c752ff9f6ad67aa302d793867ba0ea33b85e6bd3 |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/baminou/OxoG-Dockstore-Tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: c752ff9f6ad67aa302d793867ba0ea33b85e6bd3 |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/baminou/OxoG-Dockstore-Tools.git
Path: preprocess_vcf.cwl Branch/Commit ID: c752ff9f6ad67aa302d793867ba0ea33b85e6bd3 |
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extract_readgroup_fastq_pe.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroup_fastq_pe.cwl Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0 |
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preprocess.cwl
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https://github.com/Epigenomics-Screw/Screw.git
Path: cwl/preprocess.cwl Branch/Commit ID: 84cc7c986b15a4f46f67a6b4a2b2b8a7faa31bdb |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 85155424fa5654526517369be2fa479a7d4d90de |
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status_postgres.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/fastq_readgroup_stats/status_postgres.cwl Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0 |