Explore Workflows

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Graph Name Retrieved From View
workflow graph Hmmscan

Run hmmscan over an array of files (supports empty or non existent files). Each file will be chunked in 1000 sequences per file to improve the performance. The output will be the concatenation of the output tables.

https://github.com/EBI-Metagenomics/emg-viral-pipeline.git

Path: cwl/src/Tools/HMMScan/hmmscan_swf.cwl

Branch/Commit ID: 3708071d71b19e72c71c06dd2c8aa3c5a0eb232c
workflow graph bwa_mem

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl

Branch/Commit ID: f4c51a054b1ec51d07d89c6a8218e610653675f3
workflow graph cnv_exomedepth

CNV ExomeDepth calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl

Branch/Commit ID: f4c51a054b1ec51d07d89c6a8218e610653675f3
workflow graph exomeseq.cwl#exomeseq-02-variantdiscovery.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb

Packed ID: exomeseq-02-variantdiscovery.cwl
workflow graph chunking-subwf-hmmsearch.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/chunking-subwf-hmmsearch.cwl

Branch/Commit ID: a83ee883bb3c7480010fa952939fac771491ddf4
workflow graph trimmed_fastq

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: f4c51a054b1ec51d07d89c6a8218e610653675f3
workflow graph icgc_pcawg_dkfz_embl_workflow.cwl

https://github.com/sbg/sbg_dockstore_tools.git

Path: pcawg/vc/icgc_pcawg_dkfz_embl_workflow.cwl

Branch/Commit ID: a951acb0eb254f928d028b1bb4718d0e4d1e9ffe
workflow graph workflow1_11.cwl#UncompressDatatables.cwl

https://github.com/GeorgeAlehandro/cwl_1_11.git

Path: workflow1_11.cwl

Branch/Commit ID: 46d4472af75afacfb13ed92d149a4decd015cf43

Packed ID: UncompressDatatables.cwl
workflow graph harmonization_bwa_mem.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem.cwl

Branch/Commit ID: 13c106834d6c9031de08496faeff521740a0c95f
workflow graph harmonization_novoalign.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/harmonization_novoalign.cwl

Branch/Commit ID: 13c106834d6c9031de08496faeff521740a0c95f