Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph io-int-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/io-int-wf.cwl

Branch/Commit ID: 5f27e234b4ca88ed1280dedf9e3391a01de12912
workflow graph Cell Ranger Build Reference Indices

Devel version of Cell Ranger Build Reference Indices pipeline =============================================================

 https://github.com/datirium/workflows.git

Path: workflows/cellranger-mkref.cwl

Branch/Commit ID: 2c486543c335bb99b245dfe7e2f033f535efb9cf
workflow graph Nested workflow example

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/nested.cwl

Branch/Commit ID: 9e7c68c0834645ba53a7e2b5f70d53df9d051c92
workflow graph Build Bismark indices

Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input.

 https://github.com/datirium/workflows.git

Path: workflows/bismark-index.cwl

Branch/Commit ID: 2c486543c335bb99b245dfe7e2f033f535efb9cf
workflow graph mut.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut.cwl

Branch/Commit ID: 6003cbb94f16103241b562f2133e7c4acac6c621
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 40bf56daf9edab82e0f964dbd6961ca1111cd35f
workflow graph waltz-workflow.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/waltz/waltz-workflow.cwl

Branch/Commit ID: daba08457dd53fb81d11acb274c29a77b6122316
workflow graph strelka workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_and_post_processing.cwl

Branch/Commit ID: 5be54bf09092c53e6c7797a875f64a360d511d7f
workflow graph scatter-wf4.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatter-wf4.cwl

Branch/Commit ID: 8d8512061f2367c90aac67bcbf92af1061b4af59

Packed ID: main
workflow graph Produce a list of residue-mapped structural domain instances from Pfam ids

Retrieve and process the PDB structures corresponding to the Pfam family ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/pdbmap downloaded from Pfam and uses SIFTS resource for UniProt to PDB residue Mapping)

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: Tools/resmapping_pfam_instances_subwf.cwl

Branch/Commit ID: 9f3832867eab6c7a6363f8ca594a4bcf2ff7e96f