Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph conflict-wf.cwl#collision

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/conflict-wf.cwl

Branch/Commit ID: f997d13af87216e9b5048c732a511053c7ba714c

Packed ID: collision
workflow graph standard_pipeline.cwl

This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/standard_pipeline.cwl

Branch/Commit ID: 09ddd9711fb550f56d52f1806cdefd4a8cd943b0
workflow graph ROSE: rank ordering of super-enhancers

Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)

 https://github.com/datirium/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: 7ae3b75bbe614e59cdeaba06047234a6c40c0fe9
workflow graph module-3.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/module-3.cwl

Branch/Commit ID: 5bf88423593441e4bf6b432111160446cd8dcf13
workflow graph qc_workflow_wo_waltz.cwl

This workflow is intended to be used to test the QC module, without having to run the long waltz step

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow_wo_waltz.cwl

Branch/Commit ID: f8b57834ad0ce78e4d5bdd90ed0991923685d87f
workflow graph varscan somatic workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/varscan.cwl

Branch/Commit ID: 31a179d7a2f2ac86bfd7fcc4dc79832c3739ae76
workflow graph qc_workflow_wo_waltz.cwl

This workflow is intended to be used to test the QC module, without having to run the long waltz step

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow_wo_waltz.cwl

Branch/Commit ID: 0bd60a8962cc9960b7e4f6528547e220bcd2b941
workflow graph scatter-valuefrom-wf4.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf4.cwl

Branch/Commit ID: 280a852e74aec08cf79687e8004e17b1ab464534

Packed ID: main
workflow graph scatter-wf4.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-wf4.cwl

Branch/Commit ID: f997d13af87216e9b5048c732a511053c7ba714c

Packed ID: main
workflow graph htseq_workflow.cwl

https://github.com/nci-gdc/htseq-cwl.git

Path: workflows/subworkflows/htseq_workflow.cwl

Branch/Commit ID: 1ba6b619154cf892c45dec3977fbd25153bcebab