Explore Workflows

Runs mutect2 variant calling and and variant filter.

https://github.com/demichelislab/SPICE-pipeline-CWL.git

Path: cwl/workflows/mutect2_and_filter.cwl

Branch/Commit ID: 06e4a6f868651c8e26a88db518af1974159ecba9

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2

This workflow detect and remove contamination from a DNA fasta file

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/contamination-cleanup.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49

https://github.com/Andreja28/cloud-workflows.git

Path: cwl/baghdadite/deconv/workflow.cwl

Branch/Commit ID: ed5dd0589aa951193f4b98f44b0edc7f58e04ba5

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: create_snap_and_analyze.cwl

Branch/Commit ID: 4b2af54638bc471ee3e14e5f49546a2b6860804e

blastp, awk, blastdbcmd, clustalo, and fasttreeの5つのステップを実行

https://github.com/yonesora56/togotv_cwl_for_remote_container.git

Path: zatsu_cwl_bioinformatics/blast2tree_v2.cwl

Branch/Commit ID: 4aa7ab4e4f8eed6b676ea04c53afd3fe57d2ca7b

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/GATKBaseRecalBQSRWorkflow_4_1_3.cwl

Branch/Commit ID: d1bcf010d5c39d5fc01b8862db4f258df7d4f65d

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_detect_variants.cwl

Branch/Commit ID: 641083e9ed933d388f36fa04c00c20a810599e94

https://github.com/ResearchObject/runcrate.git

Path: cwl/revsortlcase/revsort.cwl

Branch/Commit ID: 33d769ba3b1086f33351f76f8db4ad841c53a69b

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl

Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a