Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	wgs alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268
	gcaccess_from_list	https://github.com/ncbi/pgap.git Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 16d1198871195e2229fd44dd0ad94a4ed6a87caf
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 686b570a9fa46f3ace3f8e9935490b75df86a1fc
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 6a29751f2b16659c1592f1e94837c989e68f3b8b
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe
	schemadef-wf.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/schemadef-wf.cwl Branch/Commit ID: a5073143db4155e05df8d2e7eb59d9e62acd65a5
	samtools_sort	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/samtools_sort.cwl Branch/Commit ID: c84d205c8239b7dea9d1b49e3e166973c3ebcd66
	umi duplex alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_umi_duplex.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1
	cnv_manta CNV Manta calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/cnv_manta.cwl Branch/Commit ID: c84d205c8239b7dea9d1b49e3e166973c3ebcd66