Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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beagle-imputation-per-region.cwl
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https://github.com/hacchy1983/imputation-server-jp.git
Path: Workflows/beagle-imputation-per-region.cwl Branch/Commit ID: main |
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maf2vcf_gz_workflow.cwl
Workflow to convert a maf file into a vcf.gz with .tbi index |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/maf2vcf_gz_workflow.cwl Branch/Commit ID: master |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: f993cad |
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BD Rhapsody™ Targeted Analysis Pipeline
The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/longbow0/cwl.git
Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl Branch/Commit ID: master Packed ID: main |
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call_cnv.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/subworkflows/call_cnv.cwl Branch/Commit ID: master |
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WGS QC workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: low-vaf |
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motorbike-pipeline.cwl
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https://github.com/MDoriana/prova-cwl.git
Path: motorbike-pipeline.cwl Branch/Commit ID: main |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: low-vaf |
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optimal-pipeline-xml.cwl
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https://github.com/MaastrichtU-IDS/OptimAL.git
Path: workflow/optimal-pipeline-xml.cwl Branch/Commit ID: master |
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Varscan Workflow
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https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: master |
