Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Chipseq alignment for mouse with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq_alignment_mouse.cwl Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/cancer-genomics-workflow.git Path: detect_variants/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: ee1afbcbe01fd17715b54d23e556a23086aeec57
	FASTQ to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622
	wffail.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/wffail.cwl Branch/Commit ID: dbc4c4c2ad30ed31367b4fbcc3bb4084fdcabaa2
	Build Bismark indices Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input.	https://github.com/datirium/workflows.git Path: workflows/bismark-index.cwl Branch/Commit ID: 22880e0f41d0420a17d643e8a6e8ee18165bbfbf
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71
	sec-wf-out.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/sec-wf-out.cwl Branch/Commit ID: 63f539ba60e91f0cb3ce7cda2c5da5c65525c375
	umi duplex alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_umi_duplex.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: b7d9ace34664d3cedb16f2512c8a6dc6debfc8ca
	Filter differentially expressed genes from DESeq for Tag Density Profile Analyses Filters differentially expressed genes from DESeq for Tag Density Profile Analyses ================================================================================== Tool filters output from DESeq pipeline run for genes to create a file with regions of interest for Tag Density Profile Analyses.	https://github.com/datirium/workflows.git Path: workflows/filter-deseq-for-heatmap.cwl Branch/Commit ID: ebbf23764ede324cabc064bd50647c1f643726fa