Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Transcripts annotation workflow
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: master |
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Varscan Workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: low-vaf |
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stat222.cwl
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: boa/stat222.cwl Branch/Commit ID: master |
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workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_dispatch/2blat/workflow.cwl Branch/Commit ID: master |
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idr-no-pooled.cwl
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https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/idr-no-pooled.cwl Branch/Commit ID: master |
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
https://github.com/barski-lab/ga4gh_challenge.git
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: master |
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Downsample and HaplotypeCaller
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: downsample_and_recall |
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WF6101.cwl
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https://github.com/Marco-Salvi/dtc61.git
Path: WF6101.cwl Branch/Commit ID: main |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: ca6ca613 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: caea457 |
