Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Quality assessment, amplicon classification and functional prediction

Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Picrust 2 - Export module for ngtax

https://gitlab.com/m-unlock/cwl.git

Path: cwl/workflows/workflow_ngtax_picrust2.cwl

Branch/Commit ID: 50aaa5a89d0cd01c80d55fb68dd72708d3796503
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c
workflow graph rhapsody_pipeline_2.0.cwl#VDJ_Analyze_Reads_TCR.cwl

https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: 50ed14112f9db254034dd5530cf1a768e04eb7ff

Packed ID: VDJ_Analyze_Reads_TCR.cwl
workflow graph ValidateCameraGeometry

Validate camera shape, orientation, and pixel positions

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateCameraGeometry.cwl

Branch/Commit ID: 789752af87eb190387ff2acb4c95c7a5cdb961e7
workflow graph era5_workflow.cwl

https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git

Path: workflows/era5_workflow.cwl

Branch/Commit ID: 70c6a6016eeb4434a3ad82af7908b83d4ea37ce7
workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c
workflow graph stage_workflow.cwl

https://github.com/NCI-GDC/gatk4_mutect2_cwl.git

Path: utils-cwl/subworkflow/stage_workflow.cwl

Branch/Commit ID: 138d484362084dfc97d9fb7d839855b4bc2c5599
workflow graph <YOUR CHALLENGE> Evaluation

BRIEF DESCRIPTION ABOUT THE CHALLENGE, e.g. This workflow will run and evaluate Docker submissions to the Awesome Challenge (syn123). Metrics returned are x, y, z.

https://github.com/osmaoui/model-to-data-challenge-workflow.git

Path: workflow.cwl

Branch/Commit ID: b63d819ba763435496e9608d0b5af304360961e9
workflow graph wgs alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_wgs.cwl

Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c