Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph step-valuefrom5-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom5-wf.cwl

Branch/Commit ID: b1d4a69df86350059bd49aa127c02be0c349f7de
workflow graph Downsample and HaplotypeCaller

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/downsample_and_recall.cwl

Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
workflow graph FASTQ Vector Removal

This workflow clean up vectros from fastq files

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/remove-fastq-reads-from-blast.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
workflow graph animal-genome-assembly.packed.cwl#main

Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak) without assembly step by canu, CWLized by Tazro Ohta (@inutano)

 https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/animal-genome-assembly/animal-genome-assembly.packed.cwl

Branch/Commit ID: 6db4456ca7314b036e59f50910654066da99772a

Packed ID: main
workflow graph loadingAD_chunkWF.cwl

https://github.com/arvados/l7g-ml.git

Path: ADAnalysis/cwl/loadingAD_chunkWF.cwl

Branch/Commit ID: e4f5bc41d307ae307e7549f128183839b30b9018
workflow graph pair-workflow-sv.cwl

https://github.com/mskcc/argos-cwl.git

Path: workflows/pair-workflow-sv.cwl

Branch/Commit ID: 507efdf727d2a5ec7b91007e7c953b1a2d81b288
workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-fasta.workflow.cwl

Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020
workflow graph animal-genome-assembly.cwl

Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak) without assembly step by canu, CWLized by Tazro Ohta (@inutano)

 https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/animal-genome-assembly/animal-genome-assembly.cwl

Branch/Commit ID: 6db4456ca7314b036e59f50910654066da99772a
workflow graph segmentation.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/segmentation.cwl

Branch/Commit ID: 2e31b8ddd4d509c7bbcb983ad41e401687623ddb