Explore Workflows

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/schemadef-wf.cwl

Branch/Commit ID: b1d4a69df86350059bd49aa127c02be0c349f7de

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf_mouse.cwl

Branch/Commit ID: ae57b60e9b01e3f0f02f4e828042748409dff5a3

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: 78fe9d41ee5a44f8725dfbd7028e4a5ee42949cf

Motif Finding with HOMER with custom background regions --------------------------------------------------- HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein). It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other. It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment. HOMER also tries its best to account for sequenced bias in the dataset. It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem. For more information please refer to: ------------------------------------- [Official documentation](http://homer.ucsd.edu/homer/motif/)

https://github.com/datirium/workflows.git

Path: workflows/homer-motif-analysis-bg.cwl

Branch/Commit ID: e99e80a2c19682d59947bde04a892d7b6d90091c

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/basename-fields-test.cwl

Branch/Commit ID: b1d4a69df86350059bd49aa127c02be0c349f7de

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: MoveData-workflow.cwl

Branch/Commit ID: 5910b4d88aca172252d9102ddb610a7dc9e1347f

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: ae57b60e9b01e3f0f02f4e828042748409dff5a3

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: e7f46046a7338b6a2bb914e263278ea9c0207326

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/gathered_cle_aml_trio.cwl

Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/cle_aml_trio.cwl

Branch/Commit ID: ec5355f335852e51c6938809c16ea1d230a3f983