Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: downsample_and_recall |
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EMG pipeline v3.0 (paired end version)
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: 3f85843 |
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gvcf-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/gvcf-distr.cwl Branch/Commit ID: master |
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pipeline.cwl
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https://github.com/hubmapconsortium/ome-tiff-pyramid.git
Path: pipeline.cwl Branch/Commit ID: 862cf41 |
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chksum_seqval_wf_paired_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_paired_fq.cwl Branch/Commit ID: v0.1.0 |
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gatk4W.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/ambarishK/bio-cwl-tools.git
Path: gatk4W.cwl Branch/Commit ID: release |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: d3b8e45 |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-04-features.cwl |
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gatk-4.0.0.0-library-cram-to-gvcfs.cwl
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https://github.com/wtsi-hgi/arvados-pipelines.git
Path: cwl/workflows/gatk-4.0.0.0-library-cram-to-gvcfs.cwl Branch/Commit ID: master |
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extract_fraginfo.cwl
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https://github.com/kyusque/abmp_log_dump2pieda.git
Path: extract_fraginfo.cwl Branch/Commit ID: master |
