Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	collapsed_fastq_to_bam.cwl	https://github.com/mskcc/innovation-pipeline.git Path: workflows/marianas/collapsed_fastq_to_bam.cwl Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf
	waltz_workflow_all_bams.cwl	https://github.com/mskcc/innovation-pipeline.git Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a
	Filter differentially expressed genes from DESeq for Tag Density Profile Analyses Filters differentially expressed genes from DESeq for Tag Density Profile Analyses ================================================================================== Tool filters output from DESeq pipeline run for genes to create a file with regions of interest for Tag Density Profile Analyses.	https://github.com/datirium/workflows.git Path: workflows/filter-deseq-for-heatmap.cwl Branch/Commit ID: cbefc215d8286447620664fb47076ba5d81aa47f
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
	workflow_input_sf_expr_v1_2.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/workflow_input_sf_expr_v1_2.cwl Branch/Commit ID: 15c8467d6d3c31a95ccc682095cf34aad125ca8c
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 4533a5e930305c674057bc4cf5dda4f39d39b5df
	kmer_seq_entry_extract_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 49732e54e2fe2eafd2f82df3c482c73e642f6d64
	cond-wf-010_nojs.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/conditionals/cond-wf-010_nojs.cwl Branch/Commit ID: 707ebcd2173889604459c5f4ffb55173c508abb3
	gcaccess_from_list	https://github.com/ncbi/pgap.git Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 33dcc054a8718edad26440f085d73b7c5d7b7871