Explore Workflows

For a given Zenodo community, retrieve a list of all its downloadable files

https://github.com/stain/ro-index-paper.git

Path: code/data-gathering/workflows/zenodo-community-links.cwl

Branch/Commit ID: master

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/methylCtools/tools/methylCtools_align_merge_sort_dedup.cwl

Branch/Commit ID: main

Test workflow

https://github.com/denis-yuen/dockstore_workflow_cnv3.git

Path: workflow/cnv.cwl

Branch/Commit ID: master

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/tumor_only_detect_variants.cwl

Branch/Commit ID: downsample_and_recall

https://github.com/bcbio/bcbio_validation_workflows.git

Path: SGDP-recall-CGC/SGDP-recall-cgc/wf-variantcall.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: c1f8b22

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_se_nostats.cwl

Branch/Commit ID: master

https://github.com/hubmapconsortium/azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: 2e4017d

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: ca6ca61

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants_nonhuman.cwl

Branch/Commit ID: master