Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph align_sort_sa

https://github.com/ncbi/pgap.git

Path: task_types/tt_align_sort_sa.cwl

Branch/Commit ID: 69c0f25d08cfa02d8bfaa85ce5d70dd14cc52e3f
workflow graph umi duplex alignment workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/duplex_alignment.cwl

Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511
workflow graph bqsr_workflow.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/BQSR/bqsr_workflow.cwl

Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf
workflow graph grep-and-count.cwl

https://github.com/yonesora56/togotv_cwl_for_remote_container.git

Path: zatsu_cwl/grep-and-count.cwl

Branch/Commit ID: 4aa7ab4e4f8eed6b676ea04c53afd3fe57d2ca7b
workflow graph prefetch_fastq.cwl

Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd

https://github.com/common-workflow-library/bio-cwl-tools.git

Path: sratoolkit/prefetch_fastq.cwl

Branch/Commit ID: 66f620da5b0a11e934a6da83272205a2516bcd91
workflow graph snps_and_indels.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/subworkflows/snps_and_indels.cwl

Branch/Commit ID: 3441040dfaecba58150c13a95a6a93657b00778a
workflow graph kmer_cache_retrieve

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_retrieve.cwl

Branch/Commit ID: 69c0f25d08cfa02d8bfaa85ce5d70dd14cc52e3f
workflow graph mutect2_calling.cwl

GATK4.1.2 Mutect2 workflow

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: subworkflows/mutect2_calling.cwl

Branch/Commit ID: 4a93f8fcd34a25427b4ade8afe1772a3287fcf1e
workflow graph filter_alignment_artifacts.cwl

GATK4.1.2 Alignment artifacts filtration workflow

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: subworkflows/filter_alignment_artifacts.cwl

Branch/Commit ID: 4a93f8fcd34a25427b4ade8afe1772a3287fcf1e
workflow graph calculate_contamination_workflow.cwl

GATK4.1.2 Calculate tumor-normal contamination workflow

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: subworkflows/calculate_contamination_workflow.cwl

Branch/Commit ID: 4a93f8fcd34a25427b4ade8afe1772a3287fcf1e