Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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SARS_psm_workflow.cwl
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https://github.com/adamscharlotte/CWL-workflow.git
Path: SARS_psm_workflow.cwl Branch/Commit ID: master |
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pulsar_timing_prototype_workflow.cwl
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https://github.com/TMCantwell/pulsar_timing_prototype.git
Path: pulsar_timing_prototype_workflow.cwl Branch/Commit ID: master |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0 |
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snps_and_indels.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/subworkflows/snps_and_indels.cwl Branch/Commit ID: master |
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qiime2 identify differentially abundant features
Differential abundance testing with ANCOM from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-09-ancom.cwl |
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WGS QC workflow nonhuman
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs_nonhuman.cwl Branch/Commit ID: master |
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exome alignment and germline variant detection
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https://github.com/litd/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: master |
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pileups_workflow.cwl
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https://github.com/ReddyLab/bird-workflow.git
Path: 01_mpileups/pileups_workflow.cwl Branch/Commit ID: main |
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gethoge-and-pigz.cwl
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https://github.com/dbcls/AOE.git
Path: gethoge-and-pigz.cwl Branch/Commit ID: master |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 14985c9 |
