Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph THOR - differential peak calling of ChIP-seq signals with replicates

What is THOR? -------------- THOR is an HMM-based approach to detect and analyze differential peaks in two sets of ChIP-seq data from distinct biological conditions with replicates. THOR performs genomic signal processing, peak calling and p-value calculation in an integrated framework. For more information please refer to: ------------------------------------- Allhoff, M., Sere K., Freitas, J., Zenke, M., Costa, I.G. (2016), Differential Peak Calling of ChIP-seq Signals with Replicates with THOR, Nucleic Acids Research, epub gkw680.

https://github.com/datirium/workflows.git

Path: workflows/rgt-thor.cwl

Branch/Commit ID: dda6e8b5ada3f106a2b3bfcc1b151eccf9977726
workflow graph kfdrc_flagstat_qc.cwl

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/kfdrc_flagstat_qc.cwl

Branch/Commit ID: 23f866f01f36efd7feb8a62d2a6765495a999974
workflow graph revsort_step_bad_schema.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/revsort_step_bad_schema.cwl

Branch/Commit ID: 6d8c2a41e2c524e8d746020cc91711ecc3418a23
workflow graph chipseq-header.cwl

https://github.com/datirium/workflows.git

Path: metadata/chipseq-header.cwl

Branch/Commit ID: d76110e0bfc40c874f82e37cef6451d74df4f908
workflow graph workflow.cwl

https://github.com/reanahub/reana-demo-root6-roofit.git

Path: workflow/cwl/workflow.cwl

Branch/Commit ID: 4291d8d1fdb8f3c202b8711b23120b4481581517
workflow graph secret_wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/secret_wf.cwl

Branch/Commit ID: 6d8c2a41e2c524e8d746020cc91711ecc3418a23
workflow graph vecscreen.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/vecscreen.cwl

Branch/Commit ID: 4ffbad9ffeab15ec8af5f6f91bd352ef96d1ef77
workflow graph count-lines9-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines9-wf.cwl

Branch/Commit ID: 3e90671b25f7840ef2926ad2bacbf447772dda94
workflow graph count-lines2-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines2-wf.cwl

Branch/Commit ID: 7d7986a6e852ca6e3239c96d3a05dd536c76c903
workflow graph mpi_simple_wf.cwl

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: 6d8c2a41e2c524e8d746020cc91711ecc3418a23