Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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workflow_mock_ngtax.cwl
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https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_mock_ngtax.cwl Branch/Commit ID: master |
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Conversion and compression of RDF files
Workflow to convert a RDF file to the HDT format and GZIP compress it for long term storage |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_toHDT_compression.cwl Branch/Commit ID: master |
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CroMaSt.cwl
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https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git
Path: CroMaSt.cwl Branch/Commit ID: b5a9d4b025ec8e065bae97eeb96f10db2dd8e1e6 |
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umi per-lane alignment subworkflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2 |
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Whole Exome Sequencing
Whole Exome Sequence analysis using GATK best practices - Germline SNP & Indel Discovery |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/exomeseq.cwl Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf Packed ID: main |
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Metagenomics workflow
Workflow pilon assembly polishing Steps: - BBmap (Read mapping to assembly) - Pilon |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_pilon_mapping.cwl Branch/Commit ID: master |
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Illumina read quality control, trimming and contamination filter.
**Workflow for Illumina paired read quality control, trimming and filtering.**<br /> Multiple paired datasets will be merged into single paired dataset.<br /> Summary: - FastQC on raw data files<br /> - fastp for read quality trimming<br /> - BBduk for phiX and (optional) rRNA filtering<br /> - Kraken2 for taxonomic classification of reads (optional)<br /> - BBmap for (contamination) filtering using given references (optional)<br /> - FastQC on filtered (merged) data<br /> **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_illumina_quality.cwl Branch/Commit ID: master |
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step-valuefrom2-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/step-valuefrom2-wf.cwl Branch/Commit ID: 57baec040c99d7edef8242ef51b5470b1c82d733 |
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bqsr-distr.cwl
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https://github.com/sentieon/sentieon-cwl.git
Path: stage/bqsr-distr.cwl Branch/Commit ID: d20382adfe7285cb517a25d95d2bcb7586546e23 |
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Genome conversion and annotation
Workflow for genome annotation from EMBL format |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_sapp_microbes.cwl Branch/Commit ID: master |
