Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 3stepWorkflow.cwl

https://github.com/giannisdoukas/CWLJNIKernel.git

Path: tests/cwl/3stepWorkflow.cwl

Branch/Commit ID: master
workflow graph cram_to_bam workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: cram_to_bam/workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph tRNA_selection.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: caea457
workflow graph demo.cwl

https://github.com/puentesdiaz/workflows.git

Path: workflows/demo.cwl

Branch/Commit ID: master
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: 16dd8ca
workflow graph qiime2 create feature visual summaries

FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-04-features.cwl

Branch/Commit ID: develop
workflow graph 1st-workflow.cwl

https://github.com/common-workflow-language/user_guide.git

Path: src/_includes/cwl/workflows/1st-workflow.cwl

Branch/Commit ID: main
workflow graph dfast-filelist-outputdir.cwl

https://github.com/nigyta/bact_genome.git

Path: cwl/workflow/dfast-filelist-outputdir.cwl

Branch/Commit ID: master
workflow graph rna amplicon analysis for fasta files

RNAs - qc, preprocess, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/amplicon-fasta.workflow.cwl

Branch/Commit ID: master
workflow graph biowardrobe_chipseq_se.4.cwl

{'extract_fastq': 'http://218.77.58.141:9619','extract_fastq2': 'http://218.77.58.141:9619','extract_fastq3': 'http://121.46.19.86:9619','extract_fastq4': 'http://121.46.19.86:9619', 'fastx_quality_stats': 'http://218.77.58.141:9619','fastx_quality_stats2': 'http://218.77.58.141:9619','fastx_quality_stats3': 'http://121.46.19.86:9619','fastx_quality_stats4': 'http://121.46.19.86:9619','bowtie_aligner': 'http://218.77.58.141:9619','bowtie_aligner2': 'http://218.77.58.141:9619', 'bowtie_aligner3': 'http://121.46.19.86:9619', 'bowtie_aligner4': 'http://121.46.19.86:9619', 'samtools_sort_index': 'http://218.77.58.141:9619','samtools_sort_index2': 'http://218.77.58.141:9619','samtools_sort_index3': 'http://121.46.19.86:9619','samtools_sort_index4': 'http://121.46.19.86:9619', 'samtools_rmdup': 'http://218.77.58.141:9619', 'samtools_rmdup2': 'http://218.77.58.141:9619', 'samtools_rmdup3': 'http://121.46.19.86:9619', 'samtools_rmdup4': 'http://121.46.19.86:9619', 'samtools_sort_index_after_rmdup': 'http://218.77.58.141:9619', 'samtools_sort_index_after_rmdup2': 'http://218.77.58.141:9619', 'samtools_sort_index_after_rmdup3': 'http://121.46.19.86:9619', 'samtools_sort_index_after_rmdup4': 'http://121.46.19.86:9619', 'macs2_callpeak': 'http://218.77.58.141:9619', 'macs2_callpeak2': 'http://218.77.58.141:9619','macs2_callpeak3': 'http://121.46.19.86:9619','macs2_callpeak4': 'http://121.46.19.86:9619', 'get_stat': 'http://218.77.58.141:9619', 'get_stat2': 'http://218.77.58.141:9619', 'get_stat3': 'http://121.46.19.86:9619', 'get_stat4': 'http://121.46.19.86:9619', 'island_intersect': 'http://218.77.58.141:9619', 'island_intersect2': 'http://218.77.58.141:9619', 'island_intersect3': 'http://121.46.19.86:9619', 'island_intersect4': 'http://121.46.19.86:9619', 'average_tag_density': 'http://218.77.58.141:9619', 'average_tag_density2': 'http://218.77.58.141:9619', 'average_tag_density3': 'http://121.46.19.86:9619', 'average_tag_density4': 'http://121.46.19.86:9619' }

 https://github.com/liuzhiyonggd/ga4gh.git

Path: biowardrobe_chipseq_se.4.cwl

Branch/Commit ID: main