Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	preprocess fastq Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 49e29dfc5b1f7a7630831a1052f9136caa29dbf7
	extract_capture_kit.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_capture_kit.cwl Branch/Commit ID: a57b8f0d8708078e87f13297e065d72db10e38a0
	integrity.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/integrity.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c
	metrics.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/dnaseq/metrics.cwl Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb
	exome alignment with qc	https://github.com/genome/cancer-genomics-workflow.git Path: exome_alignment.cwl Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a
	stats.cwl	https://github.com/EBI-Metagenomics/CWL-assembly.git Path: cwl/stats/stats.cwl Branch/Commit ID: 0ce32c67ded8d249329c8d5a6fda2471aee9b5c3
	Per-chromosome pindel	https://github.com/genome/cancer-genomics-workflow.git Path: pindel/pindel_cat.cwl Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31
	count-lines5-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: e4a52682f3bdefafe5c27e32983fed31116ac489
	extract_readgroup_fastq_pe.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_readgroup_fastq_pe.cwl Branch/Commit ID: cf2e9d7c3cc87ce97a1fbf73fad574b170fedcfb
	strelka workflow	https://github.com/genome/cancer-genomics-workflow.git Path: strelka/workflow.cwl Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31