Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	scatter-valuefrom-wf3.cwl#main	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/scatter-valuefrom-wf3.cwl Branch/Commit ID: 22490926651174c6cbe01c76c2ded3c9e8d0ee6f Packed ID: main
	1st-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/1st-workflow.cwl Branch/Commit ID: 691dea280b40ac177b4a38b33375139ca0ce7e81
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c
	record-in-secondaryFiles-wf.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/record-in-secondaryFiles-wf.cwl Branch/Commit ID: b1d4a69df86350059bd49aa127c02be0c349f7de
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c
	preparation_workflow.cwl	https://github.com/NCI-GDC/gatk4_mutect2_cwl.git Path: utils-cwl/subworkflow/preparation_workflow.cwl Branch/Commit ID: 138d484362084dfc97d9fb7d839855b4bc2c5599
	Chipseq alignment for nonhuman with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq_alignment_nonhuman.cwl Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c
	chipseq-pe.cwl Runs ChIP-Seq BioWardrobe basic analysis with paired-end input data files.	https://github.com/Barski-lab/workflows.git Path: workflows/chipseq-pe.cwl Branch/Commit ID: 8587882f145d3eb8e258e7bf819a94f8dd666dbf
	helloworld-htcondorcern.cwl	https://github.com/reanahub/reana-demo-helloworld.git Path: workflow/cwl/helloworld-htcondorcern.cwl Branch/Commit ID: 39d64e14294db8ccf9fe0b256231d0a819f53cd4
	FASTQ Download FASTQ Download Downloads FASTQ files from the provided SRR identifiers	https://github.com/datirium/workflows.git Path: workflows/fastq-download.cwl Branch/Commit ID: 12e5256de1b680c551c87fd5db6f3bc65428af67