Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	wgs alignment and germline variant detection	https://github.com/genome/cancer-genomics-workflow.git Path: wgs_workflow.cwl Branch/Commit ID: bc4a0f74082ffcf099977a1efac830d7e100bd66
	steplevel-resreq.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/steplevel-resreq.cwl Branch/Commit ID: 8dbb46740ea700469b609ae9a05f13e95cb5af6a
	default-wf5.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/default-wf5.cwl Branch/Commit ID: 9a8e654a91ea5d26e8452dd1cecf3faf22b7a12e
	integrity.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/mirnaseq/integrity.cwl Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb
	extract_amplicon_kit_http.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_amplicon_kit_http.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c
	extract_amplicon_kit.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_amplicon_kit.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c
	PGAP Pipeline	https://github.com/ncbi-gpipe/pgap.git Path: progs/unit_tests/test_univ_prot_stats/test.cwl Branch/Commit ID: bd18a57db325abd4e6a881b40b03d38e27125205
	exome alignment and somatic variant detection	https://github.com/genome/cancer-genomics-workflow.git Path: somatic_exome_workflow.cwl Branch/Commit ID: bc4a0f74082ffcf099977a1efac830d7e100bd66
	mixed_library_metrics.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/mirnaseq/mixed_library_metrics.cwl Branch/Commit ID: ff015418f870bdfbd82ba675eb549fe8b4584b0c
	preprocess fastq Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 49e29dfc5b1f7a7630831a1052f9136caa29dbf7