Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bacterial Annotation (two-pass)
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https://github.com/slottad/pgap.git
Path: bacterial_annot/wf_bacterial_annot.cwl Branch/Commit ID: master |
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plant2human workflow
\"Novel gene discovery workflow by comparing plant species and human based on structural similarity search.\" |
https://github.com/yonesora56/plant2human.git
Path: Workflow/plant2human.cwl Branch/Commit ID: 4fc824b36b986af931cc136be7a91355b772b39b |
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foldseek easy-search sub-workflow
retrieve sequence from blastdbcmd result makeblastdb: ../Tools/14_makeblastdb.cwl blastdbcmd: ../Tools/15_blastdbcmd.cwl seqretsplit: ../Tools/16_seqretsplit.cwl needle (Global alignment): ../Tools/17_needle.cwl water (Local alignment): ../Tools/17_water.cwl |
https://github.com/yonesora56/plant2human.git
Path: Workflow/11_retrieve_sequence_wf.cwl Branch/Commit ID: main |
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foldseek easy-search workflow
foldseek easy-search workflow listing files and foldseek easy-search process |
https://github.com/yonesora56/plant2human.git
Path: Workflow/10_foldseek_easy_search_wf.cwl Branch/Commit ID: main |
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rnaseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/rnaseq-header.cwl Branch/Commit ID: 93b844a80f4008cc973ea9b5efedaff32a343895 |
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abc_step01
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https://github.com/davidroberson/workflow-notebooks.git
Path: abc_enhancer_gene_prediction/abc-enchancer-gene-prediction-wf.cwl.steps/abc_step01.cwl Branch/Commit ID: main |
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Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: 93b844a80f4008cc973ea9b5efedaff32a343895 |
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Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: master |
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wf_clipseqcore_chimeric_se_1barcode.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_clipseqcore_chimeric_se_1barcode.cwl Branch/Commit ID: master |
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wf_get_peaks_chimeric_se.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_chimeric_se.cwl Branch/Commit ID: master |
