Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bwa-mem-sort-distr.cwl

https://github.com/sentieon/sentieon-cwl.git

Path: stage/bwa-mem-sort-distr.cwl

Branch/Commit ID: master
workflow graph 05-quantification-with-control.cwl

ChIP-seq - Quantification - samples: treatment and control

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/05-quantification-with-control.cwl

Branch/Commit ID: master
workflow graph find_hotspots_in_normals.cwl

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master
workflow graph A workflow that aligns a fasta file and provides statistics on the SAM file

A workflow that aligns a fasta file and provides statistics on the SAM file

 https://github.com/svonworl/multi-step-cwl.git

Path: version_1_2/sub_workflow_align_and_metrics.cwl

Branch/Commit ID: develop
workflow graph pipeline-se-blacklist-removal.cwl

ATAC-seq pipeline - reads: SE - with blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl

Branch/Commit ID: master
workflow graph ChIP-seq peak caller workflow MACS2 based

This workflow execute peak caller and QC for ChIP-seq using MACS2

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/peak-calling-MACS2-genome-size.cwl

Branch/Commit ID: master
workflow graph main.cwl

https://github.com/smc-rna-challenge/tnv-8289993.git

Path: main.cwl

Branch/Commit ID: master
workflow graph bams2gvcf.woBQSR_female.multisamples.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR_female.multisamples.cwl

Branch/Commit ID: master
workflow graph dynresreq-workflow-tooldefault.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/dynresreq-workflow-tooldefault.cwl

Branch/Commit ID: master
workflow graph gdc_main_annotation_workflow.cwl

https://github.com/NCI-GDC/vep-cwl.git

Path: v102/workflows/subworkflows/gdc_main_annotation_workflow.cwl

Branch/Commit ID: master