Explore Workflows

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/transform.cwl

Branch/Commit ID: ff015418f870bdfbd82ba675eb549fe8b4584b0c

RNA-seq 01 QC - reads: PE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: 71146d85ae7f0c562ec0d454fbbb7085a827356e

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-giab-mix/somatic-giab-mix-workflow/wf-variantcall.cwl

Branch/Commit ID: afd674a6d64fb4e115c0b3fe95b7bb1b73ec69a9

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/align.cwl

Branch/Commit ID: ee1afbcbe01fd17715b54d23e556a23086aeec57

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-lowfreq/pisces-ras-workflow/main-pisces-ras.cwl

Branch/Commit ID: afd674a6d64fb4e115c0b3fe95b7bb1b73ec69a9

Split reads in a BAM file by strands and index forward and reverse output BAM files

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/quant/split-bams-by-strand-and-index.cwl

Branch/Commit ID: 71146d85ae7f0c562ec0d454fbbb7085a827356e

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/mirnaseq/runner.cwl

Branch/Commit ID: d5757ab1f3aad3c542950e1dbe8f9d2eec74bede

ATAC-seq 03 mapping - reads: SE - blacklist removal

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl

Branch/Commit ID: 71146d85ae7f0c562ec0d454fbbb7085a827356e

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/examples/nestedworkflows.cwl

Branch/Commit ID: 4fd45edb9531a03223c18a586e32d0baf0d5acb2

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-6.cwl

Branch/Commit ID: 3ec29bfdcbc444c6599e484640cf83a7c5d91aaa