Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pindel parallel workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: pindel/workflow.cwl

Branch/Commit ID: 6791f7701b91dd64f9255d6e1ebde5995ebc581e
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: a7d65918c444ee3c99c56bd0f08c2ce670a853ed
workflow graph bgzip and index VCF

https://github.com/genome/arvados_trial.git

Path: varscan/bgzip_and_index.cwl

Branch/Commit ID: 202b43b7449485a317c857d62ca7d39196764e65
workflow graph post-correct-dir.cwl

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/post-correct-dir.cwl

Branch/Commit ID: 9f33fb8a059b6a75646c82edcd91b6beb645894f
workflow graph annotator_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 0fa87c018a21d55cdea6e89be1feec1913144009
workflow graph dynresreq-workflow.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/dynresreq-workflow.cwl

Branch/Commit ID: 4fe434e969c93c94b690ba72db295d9d52a6f576
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 88c5eef2f5ee5c1e878b0476f6e1f74cecf9ec29
workflow graph 5S-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: 823cdf7a6601a3799f6167f3566ae02590748f6b
workflow graph TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: 9a7118913ae4c9fda6b976170c0eeeed66681dde
workflow graph gatk-4.0.0.0-haplotypecaller-genotypegvcfs-libraries.cwl

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/gatk-4.0.0.0-haplotypecaller-genotypegvcfs-libraries.cwl

Branch/Commit ID: 53031601de415a071b7034b28984393db183efa7