Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph consensus_bed.cwl

Workflow to merge a large number of maf files into a single consensus bed file

https://github.com/mskcc/pluto-cwl.git

Path: cwl/consensus_bed.cwl

Branch/Commit ID: master
workflow graph Filter single sample sv vcf from paired read callers(Manta/Smoove)

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl

Branch/Commit ID: downsample_and_recall
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 9225fa2
workflow graph step-valuefrom-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/step-valuefrom-wf.cwl

Branch/Commit ID: main
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: master
workflow graph hashsplitter-workflow.cwl

https://github.com/uniqueg/cwl-example-workflows.git

Path: hashsplitter-workflow.cwl

Branch/Commit ID: master
workflow graph BlastP_RBH_workflow

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/blast_workflow.cwl

Branch/Commit ID: master
workflow graph rna amplicon analysis for fastq files

RNAs - qc, preprocess, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/amplicon-fastq.workflow.cwl

Branch/Commit ID: master
workflow graph io-union-input-default-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/io-union-input-default-wf.cwl

Branch/Commit ID: main
workflow graph revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/revsort.cwl

Branch/Commit ID: master