Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bwameth_mulitlib_start_with_trimmed.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/bwameth/bwameth_mulitlib_start_with_trimmed.cwl Branch/Commit ID: 1416ade270d1b990087e39c6680464c12cf564cc |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: d297528e53b6c1ecb69b1ab27b8e03323b4463ad |
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checkInput.cwl
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https://github.com/Gepiro/microbiomeAnalysisCWL.git
Path: cwl/checkInput.cwl Branch/Commit ID: main |
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cram_to_bam workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 31a179d7a2f2ac86bfd7fcc4dc79832c3739ae76 |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 31a179d7a2f2ac86bfd7fcc4dc79832c3739ae76 |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e |
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rnaseq-se.cwl
Runs RNA-Seq BioWardrobe basic analysis with single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/rnaseq-se.cwl Branch/Commit ID: cf84038de256c7ca98657ad81734d1aca1dad8c1 |
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Deprecated. AltAnalyze ICGS
Deprecated. AltAnalyze ICGS |
https://github.com/datirium/workflows.git
Path: workflows/altanalyze-icgs.cwl Branch/Commit ID: d76110e0bfc40c874f82e37cef6451d74df4f908 |
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Seed Protein Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_seqids.cwl Branch/Commit ID: 1cfd46014be8d867044cb10d1ddde0cb3068ee84 |
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Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: d76110e0bfc40c874f82e37cef6451d74df4f908 |
