Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph rmats_wf.cwl

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/rmats_wf.cwl

Branch/Commit ID: master
workflow graph count-lines6-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines6-wf.cwl

Branch/Commit ID: main
workflow graph LSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/LSU-from-tablehits.cwl

Branch/Commit ID: 71d9c83
workflow graph createindex.cwl

https://github.com/yyoshiaki/virtus.git

Path: workflow/createindex.cwl

Branch/Commit ID: master
workflow graph blastp_wnode_naming

https://github.com/ncbi/pgap.git

Path: task_types/tt_blastp_wnode_naming.cwl

Branch/Commit ID: master
workflow graph salmon_DESeq2.cwl

https://github.com/rawgene/cwl.git

Path: workflows/salmon_DESeq2.cwl

Branch/Commit ID: master
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: 123d1bd
workflow graph module-5

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-5.cwl

Branch/Commit ID: 2.4.x
workflow graph transcriptome-assembly.cwl

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/transcriptome-assembly/transcriptome-assembly.cwl

Branch/Commit ID: main
workflow graph wf_demultiplex_se.cwl

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/YeoLab/eclip.git

Path: cwl/wf_demultiplex_se.cwl

Branch/Commit ID: master