Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	plant2human workflow Novel gene discovery workflow by comparing plant species and model organisms with humans based on structural similarity search.	https://github.com/yonesora56/plant2human.git Path: Workflow/plant2human_v1_1.cwl Branch/Commit ID: 9bd80581d7ced3ee307b020eb4b091e411c3cbfb
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: ae79bc51e8b502164dbe74ea3b068d6d4d36a1f8
	bam_readcount workflow	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
	scatter-wf1.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-wf1.cwl Branch/Commit ID: 280a852e74aec08cf79687e8004e17b1ab464534
	heatmap.cwl Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension	https://github.com/Barski-lab/workflows.git Path: workflows/heatmap.cwl Branch/Commit ID: 568da91bb1c6182ba4f146e2a729cac1c3d8783c
	Hello World Outputs a message using echo	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/hello-workflow.cwl Branch/Commit ID: 7bfe73a708dbf31d037303bb5a8fed1a79984b0f
	canine_snpeff_module.cwl	https://github.com/d3b-center/canine-dev.git Path: subworkflows/canine_snpeff_module.cwl Branch/Commit ID: 462aaebbd442e84ea101b45b716df0174b88512e
	PCA - Principal Component Analysis Principal Component Analysis --------------- Principal component analysis (PCA) is a statistical procedure that uses an orthogonal transformation to convert a set of observations of possibly correlated variables (entities each of which takes on various numerical values) into a set of values of linearly uncorrelated variables called principal components. The calculation is done by a singular value decomposition of the (centered and possibly scaled) data matrix, not by using eigen on the covariance matrix. This is generally the preferred method for numerical accuracy.	https://github.com/datirium/workflows.git Path: workflows/pca.cwl Branch/Commit ID: bf80c9339d81a78aefb8de661bff998ed86e836e
	Run tRNAScan	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 9f45453202aedb6c91ecd6a0e8c91730cca646de
	count-lines2-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl Branch/Commit ID: bfe56f3138e9e6fc0b9b8c06447553d4cea03d59