Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
exomeseq-gatk4-01-preprocessing.cwl
|
https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-gatk4-01-preprocessing.cwl Branch/Commit ID: master |
|
|
|
record-output-wf.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/record-output-wf.cwl Branch/Commit ID: master |
|
|
|
cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl Branch/Commit ID: master |
|
|
|
bulk_analysis.cwl
|
https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/bulk_analysis.cwl Branch/Commit ID: 3da5dd0 |
|
|
|
collate_unique_SSU_headers.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: fa86fce |
|
|
|
ValidateNightSkyBackgroundMeasurement
Validate measurements of the night-sky background including the impact of stars or moon light. |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateNightSkyBackgroundMeasurement.cwl Branch/Commit ID: main |
|
|
|
workflow.cwl
|
https://github.com/lanl/BEE.git
Path: examples/cat-grep-tar/workflow.cwl Branch/Commit ID: develop |
|
|
|
Bacterial Annotation, ab initio (first pass) searched against AntiFam
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_ab_initio_antifam.cwl Branch/Commit ID: test |
|
|
|
Salmon quantification, FASTQ -> H5AD count matrix
|
https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: salmon-rnaseq/steps/salmon-quantification.cwl Branch/Commit ID: ec8a7e8 |
|
|
|
pcawg_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: pcawg_annotate_wf.cwl Branch/Commit ID: develop |
