Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea |
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amplicon-1.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/conditionals/amplicon/amplicon-1.cwl Branch/Commit ID: 4b98d8bf882bc96d924b5d2d4e6d9c188fa7b273 |
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screen out taxa
Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files) |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/organism-screening.workflow.cwl Branch/Commit ID: 932da3abed7166bd5a962871386ba2c31d47b85c |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1 |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00 |
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kmer_build_tree
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 7f9cfcbda5998b164bd1d8f1f6006aefda0f47f3 |
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Compute library complexity
This workflow compute library complexity |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/bedtools-bam-pbc.cwl Branch/Commit ID: 92c23571bd5925c3d33678bc944a8546597cf3a3 |
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starfishRunner.cwl
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https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git
Path: steps/starfishRunner.cwl Branch/Commit ID: 5b866e480fb557cf53d619a22068c73548e337d5 |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d |
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count-lines2-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl Branch/Commit ID: 4700fbee9a5a3271eef8bc9ee595619d0720431b |
