Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	cond-wf-004.1.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/cond-wf-004.1.cwl Branch/Commit ID: 77669d4dd1d1ebd2bdd9810f911608146d9b8e51
	wf-loadContents3.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/wf-loadContents3.cwl Branch/Commit ID: 707ebcd2173889604459c5f4ffb55173c508abb3
	env-wf1.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/env-wf1.cwl Branch/Commit ID: 707ebcd2173889604459c5f4ffb55173c508abb3
	steplevel-resreq.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/steplevel-resreq.cwl Branch/Commit ID: 20d664eff23e59aa57908345bfdb1ceeab3438f2
	Motif Finding with HOMER with custom background regions Motif Finding with HOMER with custom background regions --------------------------------------------------- HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein). It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other. It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment. HOMER also tries its best to account for sequenced bias in the dataset. It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem. For more information please refer to: ------------------------------------- [Official documentation](http://homer.ucsd.edu/homer/motif/)	https://github.com/datirium/workflows.git Path: workflows/homer-motif-analysis-bg.cwl Branch/Commit ID: 954bb2f213d97dfef1cddaf9e830169a92ad0c6b
	revsort-array.cwl Reverse the lines in a document, then sort those lines.	https://github.com/Duke-GCB/calrissian.git Path: input-data/revsort-array.cwl Branch/Commit ID: 4fd8e7dbcff5492cb32e4fb15263a51fa4490cf1
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: a670f323e77e02d9b77be9a13d73d5276dd3676c
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome_nonhuman.cwl Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec
	RNA-seq alelle specific pipeline for paired-end data Allele specific RNA-Seq paired-end workflow	https://github.com/datirium/workflows.git Path: workflows/allele-rnaseq-pe.cwl Branch/Commit ID: c602e3cdd72ff904dd54d46ba2b5146eb1c57022
	Single-Cell Preprocessing Pipeline Devel version of Single-Cell Preprocessing Pipeline ===================================================	https://github.com/datirium/workflows.git Path: workflows/single-cell-preprocess.cwl Branch/Commit ID: cbefc215d8286447620664fb47076ba5d81aa47f