Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exomeseq-gatk4-02-variantdiscovery.cwl	https://github.com/Duke-GCB/bespin-cwl.git Path: subworkflows/exomeseq-gatk4-02-variantdiscovery.cwl Branch/Commit ID: 9f96a6621a0925d4a1ef4b6a733316149520b008
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 485f0be56cea77bff62b797ae7eff422a990a92c
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: e71779665f42fcf34601b0f65e030bb0dd47fa79
	wf_get_peaks_nostats_se.cwl	https://github.com/YeoLab/eclip.git Path: cwl/wf_get_peaks_nostats_se.cwl Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600
	Vegetation index Vegetation index processor, the greatest	https://github.com/EOEPCA/app-vegetation-index.git Path: vegetation-index.cwl Branch/Commit ID: dbf6e6e9da00019b0c4f7e497da59e68ba955486 Packed ID: vegetation-index
	cnv_codex CNV CODEX calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: f4c51a054b1ec51d07d89c6a8218e610653675f3
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 258bd4353ad1ca7790b3ae626bf42ab8194e7561
	annotator_sub_wf.cwl This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!	https://github.com/david4096/OxoG-Dockstore-Tools.git Path: annotator_sub_wf.cwl Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405