Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph raw-reads-wf--v.5-cond.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/raw-reads-wf--v.5-cond.cwl

Branch/Commit ID: master
workflow graph bqsr-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/bqsr-distr.cwl

Branch/Commit ID: master
workflow graph exome alignment and germline variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/germline_exome.cwl

Branch/Commit ID: downsample_and_recall
workflow graph kmer_ref_compare_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_ref_compare_wnode.cwl

Branch/Commit ID: 7edbf07405191db65a913e311a7f2260b076d36c
workflow graph collate_unique_SSU_headers.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 3168316
workflow graph 04-quantification-se-unstranded.cwl

RNA-seq 04 quantification

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl

Branch/Commit ID: master
workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/svonworl/oxog-dockstore-tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: master
workflow graph bam_qc_stats

https://github.com/msk-access/qc_generation.git

Path: access_qc__packed.cwl

Branch/Commit ID: develop

Packed ID: bam_qc_stats.cwl
workflow graph pack.cwl

create textures and pack them to be a stellaris mod

 https://github.com/undu/stellaris-emblem-lab.git

Path: pack/pack.cwl

Branch/Commit ID: master
workflow graph hisat2_cufflink_cuffmerge_cuffquant_ballgown.cuffdiffs.cwl

https://github.com/rawgene/cwl.git

Path: workflows/hisat2_cufflink_cuffmerge_cuffquant_ballgown.cuffdiffs.cwl

Branch/Commit ID: master