Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph gp_makeblastdb

https://github.com/ncbi/pgap.git

Path: progs/gp_makeblastdb.cwl

Branch/Commit ID: c17cac4c046f8ba2b8574a121c44a72d2e6b27e6
workflow graph wf.cwl#VDJ_GatherCalls.cwl

VDJ_GatherCalls collect the outputs from the multi-processed VDJ step into one file.

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: VDJ_GatherCalls.cwl
workflow graph wf.cwl#VDJ_Preprocess_Reads.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: VDJ_Preprocess_Reads.cwl
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/david4096/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4
workflow graph wf.cwl#VDJ_Assemble_and_Annotate_Contigs_TCR.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: VDJ_Assemble_and_Annotate_Contigs_TCR.cwl
workflow graph wf.cwl#VDJ_Analyze_Reads_TCR.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: VDJ_Analyze_Reads_TCR.cwl
workflow graph wf.cwl#SplitAndSubsample.cwl

SplitAndSubsample splits, subsamples and formats read files to be deposited in QualityFilter.

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: SplitAndSubsample.cwl
workflow graph wf.cwl#UncompressDatatables.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: UncompressDatatables.cwl
workflow graph helloworld-nested.cwl

https://github.com/audrium/reana-demo-scattered-helloworld.git

Path: workflow/cwl/helloworld-nested.cwl

Branch/Commit ID: bf9ff46e2b768588b4bf2afd95a0c7c76cf01252
workflow graph BD Rhapsody™ WTA Analysis Pipeline

The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

 https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: main