Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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transform.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/validate/transform.cwl Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7 |
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etl_http.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/etl_http.cwl Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7 |
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qiime2 DADA2 detect/correct paired sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: 777dbcd05b5d115371dcda6d54ebaf75dae8afb8 Packed ID: qiime2-03-dada2-paired.cwl |
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etl.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/fastq_readgroup_stats/etl.cwl Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7 |
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exomeseq-gatk4-01-preprocessing.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-gatk4-01-preprocessing.cwl Branch/Commit ID: e82f3a71183048dd6700ec6725ee526ac1a95238 |
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extract_readgroups_bam_http.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroups_bam_http.cwl Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7 |
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QIIME2 Step 2 (DADA2 option)
QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: 777dbcd05b5d115371dcda6d54ebaf75dae8afb8 Packed ID: main |
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qiime2 importing data
Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step1-import-demux-paired.cwl Branch/Commit ID: 777dbcd05b5d115371dcda6d54ebaf75dae8afb8 Packed ID: qiime2-01-import-data-paired.cwl |
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ConcordanceTestWorkflow.cwl
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https://github.com/DataBiosphere/topmed-workflows.git
Path: vcf-comparator/ConcordanceTestWorkflow.cwl Branch/Commit ID: de5e708a67fd326bc00c0ee280eec2a29b004a0f |
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Hello World
Outputs a message using echo |
https://github.com/alexbarrera/GGR-cwl.git
Path: workflows/workflows/hello/hello.cwl Branch/Commit ID: 71146d85ae7f0c562ec0d454fbbb7085a827356e |