Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	module-2.cwl	https://github.com/andurill/ACCESS-Pipeline.git Path: workflows/module-2.cwl Branch/Commit ID: f874bd8a9bb7da9839f0aa6be708d5d16f72945d
	bam_readcount workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
	Production Configuration This workflow prepares the configuration of the subsequent production steps.	https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git Path: workflows/wms/uc-wms-XXX.cwl Branch/Commit ID: 3ee0537d37f8e32666d2ec72e54f42a40f72bce8
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c
	preprocess fasta Remove reads from fasta files based on sequence stats. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fasta.workflow.cwl Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: c711498c04d6b8ddf92ddceb6219f074765f7993
	module-1.cwl	https://github.com/andurill/ACCESS-Pipeline.git Path: workflows/module-1.cwl Branch/Commit ID: f874bd8a9bb7da9839f0aa6be708d5d16f72945d
	metabarcode (gene amplicon) analysis for fastq files protein - qc, preprocess, annotation, index, abundance	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/metabarcode-fastq.workflow.cwl Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: aba52e94b6d7470132d3c092c26d67e29d615300
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: c17cac4c046f8ba2b8574a121c44a72d2e6b27e6