Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph metabarcode (gene amplicon) analysis for fastq files

protein - qc, preprocess, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/metabarcode-fastq.workflow.cwl

Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: aba52e94b6d7470132d3c092c26d67e29d615300
workflow graph gp_makeblastdb

https://github.com/ncbi/pgap.git

Path: progs/gp_makeblastdb.cwl

Branch/Commit ID: c17cac4c046f8ba2b8574a121c44a72d2e6b27e6
workflow graph wf.cwl#VDJ_GatherCalls.cwl

VDJ_GatherCalls collect the outputs from the multi-processed VDJ step into one file.

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: VDJ_GatherCalls.cwl
workflow graph wf.cwl#VDJ_Preprocess_Reads.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: VDJ_Preprocess_Reads.cwl
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/david4096/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4
workflow graph wf.cwl#VDJ_Assemble_and_Annotate_Contigs_TCR.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: VDJ_Assemble_and_Annotate_Contigs_TCR.cwl
workflow graph wf.cwl#VDJ_Analyze_Reads_TCR.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: VDJ_Analyze_Reads_TCR.cwl
workflow graph wf.cwl#SplitAndSubsample.cwl

SplitAndSubsample splits, subsamples and formats read files to be deposited in QualityFilter.

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: SplitAndSubsample.cwl
workflow graph wf.cwl#UncompressDatatables.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61

Packed ID: UncompressDatatables.cwl